Pilot Study of the Human Metagenome in Metabolic Diseases

NCT ID: NCT06363253

Last Updated: 2025-05-15

Study Results

Results pending

The study team has not published outcome measurements, participant flow, or safety data for this trial yet. Check back later for updates.

Basic Information

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Recruitment Status

RECRUITING

Total Enrollment

600 participants

Study Classification

OBSERVATIONAL

Study Start Date

2023-08-14

Study Completion Date

2027-12-31

Brief Summary

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This is a cohort study to understand the role of the human metagenome, and associated metabolites, in health and in various diseased states, in particular obesity as well as sarcopenia.

Recruited participants will have their fecal, salivary, urine, serum, and in certain instances, mucosal samples taken, for metagenomic sequencing and metabolite testing.

We hope to uncover various differences and signatures in the metagenome and metabolome in various diseased states, with potential future therapeutic applications in personalised medicine.

Detailed Description

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The human metagenome comprises all nucleotide sequences isolated from all organisms living on and within an individual and has been shown to have significant alterations in relation to certain diseased states related to chronic inflammation, such as obesity and sarcopenia.

The gut bacteriome, and more recently the virome, has been shown to be significantly correlated with the obese phenotype, while gut microbiome dysbiosis is known to occur in individuals with sarcopenia. Clinically, there is an unmet clinical need to better personalize the treatment of patients with metabolic disorders such as obesity and metabolic syndrome, and patients suffering from sarcopenia and frailty as a result of aging. However, the literature regarding the metagenomic signatures associated with these disorders, in particular the non-bacteriome species, bacterial metabolites, and their relationship with host metabolism, were scarce.

Thus we hypothesize, that the human metagenome and metabolome, may play a role in influencing chronic inflammatory disorders related to metabolic disorders, such as obesity and diseases related to aging like sarcopenia and aging.

This is a cohort study, involving metagenomic sequencing and metabolomic analysis, of patients metagenome and metabolome, in various diseased states. A cohort of healthy control patients without obesity or sarcopenia will also be recruited.

Samples collected will include fecal, salivary, serum, urine, mucosal samples for metagenomic sequencing and metabolomic testing.

Conditions

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Obesity Sarcopenia Sarcopenic Obesity Chronic Inflammation Metabolic Syndrome

Study Design

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Observational Model Type

COHORT

Study Time Perspective

PROSPECTIVE

Study Groups

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Obese

Patients with BMI \> 27.5 kg/m2

No specific intervention

Intervention Type OTHER

Patient will undergo their routine clinical treatment for their related clinical condition (eg. anti-obesity or bariatric intervention for obese group; muscle strengthening interventions or necessary treatment for their concomitant medical condition for the sarcopenia group).

Follow-up testing will include repeat assessment of the subjects metagenome and metabolome over time, and after intervention

Control subjects will have no interventions performed as well.

Sarcopenic

Patients who are sarcopenic, defined by the Asian Working Group on Sarcopenia 2014 criteria, which is defined as

1. having low handgrip strength (\<26kg for males; \<18kg for females) AND/OR
2. Low gait speed (\<0.8m/s) AND
3. Low muscle mass (\<7.0kg/m2 for males; \<5.7kg/m2 for females)

No specific intervention

Intervention Type OTHER

Patient will undergo their routine clinical treatment for their related clinical condition (eg. anti-obesity or bariatric intervention for obese group; muscle strengthening interventions or necessary treatment for their concomitant medical condition for the sarcopenia group).

Follow-up testing will include repeat assessment of the subjects metagenome and metabolome over time, and after intervention

Control subjects will have no interventions performed as well.

Controls

Healthy volunteers who are not obese (BMI \<27.5kg/m2), OR who are screened and found to not be sarcopenic

No specific intervention

Intervention Type OTHER

Patient will undergo their routine clinical treatment for their related clinical condition (eg. anti-obesity or bariatric intervention for obese group; muscle strengthening interventions or necessary treatment for their concomitant medical condition for the sarcopenia group).

Follow-up testing will include repeat assessment of the subjects metagenome and metabolome over time, and after intervention

Control subjects will have no interventions performed as well.

Interventions

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No specific intervention

Patient will undergo their routine clinical treatment for their related clinical condition (eg. anti-obesity or bariatric intervention for obese group; muscle strengthening interventions or necessary treatment for their concomitant medical condition for the sarcopenia group).

Follow-up testing will include repeat assessment of the subjects metagenome and metabolome over time, and after intervention

Control subjects will have no interventions performed as well.

Intervention Type OTHER

Eligibility Criteria

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Inclusion Criteria

* Obese (BMI\>27.5kg/m2)


* Sarcopenic patients, defined as 1) low handgrip strength (\<26 for males; \<18kg for females), AND/OR low gait speed (\<0.8m/s) AND low muscle mass (\<7.0kg/m2 for males; \<5.7kg/m2 for females)


\- Healthy subjects without sarcopenia, and not obese (BMI\<27.5kg/m2)

Exclusion Criteria

* No informed consent
* Presence of intestinal stoma, hence inability to collect fecal samples
Minimum Eligible Age

21 Years

Maximum Eligible Age

99 Years

Eligible Sex

ALL

Accepts Healthy Volunteers

Yes

Sponsors

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Singapore General Hospital

OTHER

Sponsor Role collaborator

Lee Kong Chian School of Medicine, Nanyang Technological University

UNKNOWN

Sponsor Role collaborator

Duke-NUS Graduate Medical School

OTHER

Sponsor Role collaborator

Sengkang General Hospital

OTHER

Sponsor Role lead

Responsible Party

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Chue Koy Min

Clinical Assistant Professor

Responsibility Role PRINCIPAL_INVESTIGATOR

Locations

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Sengkang General Hospital

Singapore, , Singapore

Site Status RECRUITING

Countries

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Singapore

Central Contacts

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Koy Min Chue

Role: CONTACT

Facility Contacts

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Koy Min Chue

Role: primary

Other Identifiers

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CIRB Ref: 2023/2073

Identifier Type: -

Identifier Source: org_study_id

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