Kidney Precision Medicine Project

NCT ID: NCT04334707

Last Updated: 2022-05-19

Study Results

Results pending

The study team has not published outcome measurements, participant flow, or safety data for this trial yet. Check back later for updates.

Basic Information

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Recruitment Status

RECRUITING

Total Enrollment

1000 participants

Study Classification

OBSERVATIONAL

Study Start Date

2019-09-01

Study Completion Date

2027-06-30

Brief Summary

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Acute kidney injury (AKI) and chronic kidney disease (CKD) impose a significant global health burden. Yet, no effective therapies currently exist for AKI, and only a few are available for CKD.

Despite significant effort from industry and academia, development of pharmacologic therapies for AKI and CKD has been hampered by:

Non-predictive animal models The inability to identify and prioritize human targets The limited availability of human kidney biopsy tissue A poor understanding of AKI and CKD heterogeneity Historically, AKI and CKD have been described as single, uniform diseases. However, growing consensus suggests that different disease pathways lead to different subgroups of AKI and CKD (AKIs and CKDs).

Access to human kidney biopsy tissue is a critical first step to define disease heterogeneity and determine the precise molecular pathways that will facilitate identification of specific drug targets and ultimately enable individualized care for people with AKI and CKD.

A number of research centers across the United States are collaborating to bring state-of-the-art technologies together to:

* Ethically obtain and evaluate kidney biopsies from participants with AKI or CKD
* Define disease subgroups
* Create a kidney tissue atlas
* Identify critical cells, pathways, and targets for novel therapies

The KPMP is made up of three distinct, but highly interactive, activity groups:

* Recruitment Sites: The recruitment sites (RS) are responsible for recruiting participants with AKI or CKD into the longitudinal study and performing the kidney biopsy.
* Tissue Interrogation Sites: The tissue interrogation sites (TIS) are responsible for developing and using innovative technologies to analyze the biopsy tissue.
* Central Hub: The central hub is responsible for aggregating, analyzing, and visualizing the generated data and providing scientific, infrastructure, and administrative support for the KPMP consortium.

Detailed Description

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The Kidney Precision Medicine Project (KPMP) is a prospective cohort study, whose goal is to use deep molecular phenotypes of kidney biopsies, along with longitudinally collected clinical phenotypic data, in order to develop new disease ontologies, classification systems, and treatments for acute kidney injury (AKI) and chronic kidney disease (CKD). Since its inception, the KPMP has sought out and included substantive patient-representative feedback regarding disease experience, lack of innovation in new kidney disease therapies and patient tolerance for risk levels in balance with potential benefits both to the individual and society.

The KPMP Has publicly and operationally committed itself to always put participants and their best interests first and this foundational principle informs and undergirds every facet of the study. Both AKI and CKD are conditions that impose a significant global health burden. Yet, no effective therapies currently exist for AKI, and only a few are available for CKD. The network will utilize state-of-the-art methods to perform molecular interrogation of the tissue and to link the molecular data to kidney structure and clinical information in the form of a kidney tissue atlas.

Molecular and imaging data derived from kidney tissue will be integrated with clinico-pathologic and genetic information, as well as other data derived from analyses of fluid biospecimens, including peripheral blood, urine, and stool. Using advanced analytics to integrate the data, KPMP will aim to define kidney disease subgroups in molecular terms by identifying critical cells, pathways and targets for novel therapies.

Patients with AKI or CKD will be recruited from clinical care encounters (e.g., clinic visits for CKD patients, hospitalization or emergency room visits for AKI patients) and from electronic resources (e.g., existing registries, electronic health records). All study procedures are designed to optimize participant safety and will be ethically conducted, ensuring subjects fully understand the scope of the study and any possible risks.

For each participant, kidney tissue will be obtained for molecular phenotyping and clinical diagnosis. The diagnostic interpretation will be returned to the participant's primary caregiver to inform clinical care, but no treatment interventions will be prescribed by the KPMP. In addition to kidney biopsy, the study will involve collection of baseline (time of biopsy) and longitudinal biospecimens (including urine, plasma, serum, DNA and stool) and demographic, clinical, and laboratory data. Participants will be followed through scheduled in-person and remote (telephone) study visits, as well as through periodic review of electronic health records.

Conditions

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Acute Kidney Failure Acute Kidney Insufficiency Acute Renal Failure Acute Renal Injury Acute Renal Insufficiency Kidney Failure, Acute Kidney Insufficiency, Acute Renal Failure, Acute Renal Insufficiency, Acute Chronic Kidney Diseases Chronic Kidney Insufficiency Chronic Renal Diseases Chronic Renal Insufficiency Kidney Insufficiency, Chronic

Study Design

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Observational Model Type

COHORT

Study Time Perspective

PROSPECTIVE

Study Groups

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Acute Kidney Injury Cohort

The focus will be on acute intrinsic non-glomerular disease, primarily on acute tubular necrosis (ATN). KPMP will also include a special population of patients at risk for AKI or with early AKI captured by an open (surgical) kidney biopsy performed at the time of clinically indicated laparotomy.

Kidney Biopsy

Intervention Type PROCEDURE

A kidney biopsy is a procedure that involves taking a small piece of kidney tissue for examination with a microscope. A licensed health care provider will perform a kidney biopsy.

Chronic Kidney Diseases Cohort

High priority populations include CKD in the setting of diabetes (diabetic kidney disease, DKD) and hypertension-associated CKD (H-CKD). A special population of people with long-standing type 1 diabetes (more than 25 years) who remain free of clinically-evident DKD will also be included.

Kidney Biopsy

Intervention Type PROCEDURE

A kidney biopsy is a procedure that involves taking a small piece of kidney tissue for examination with a microscope. A licensed health care provider will perform a kidney biopsy.

Interventions

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Kidney Biopsy

A kidney biopsy is a procedure that involves taking a small piece of kidney tissue for examination with a microscope. A licensed health care provider will perform a kidney biopsy.

Intervention Type PROCEDURE

Other Intervention Names

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Renal Biopsy Laparotomy

Eligibility Criteria

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Inclusion Criteria

* Diagnosis of diabetes mellitus (type 1 or 2) established by at least one of the following criteria:

* Hemoglobin A1C greater than or equal to 6.5%, confirmed with a repeat test within the past year
* Fasting blood sugar greater than or equal to 126 mg/dL, confirmed with a repeat test within the past year
* Use of glucose-lowering therapy (insulin or oral or other subcutaneous agents)
* International Classification of Diseases (ICD) 9/10 diagnostic code for diabetes
* Evidence of persistent kidney damage, manifest as any of the following present on at least two clinic assessments prior to enrollment and at least 3 months apart and excluding subjects with acute medical illnesses and changing kidney function:

* Estimated glomerular filtration rate 30-59 mL/min/1.73m2
* Estimated glomerular filtration rate greater than or equal to 60 mL/min/1.73m2 with urine albumin excretion greater than or equal to 30 mg/g creatinine (or mg/day)
* Estimated glomerular filtration rate greater than or equal to 60 mL/min/1.73m2 with urine protein excretion greater than or equal to 150 mg/g creatinine (or mg/day)


* Diagnosis of hypertension (HTN) established by at least one of the following criteria:

* BP greater than 140/90 mmHg measured on three occasions over at least 1 month
* Taking antihypertensive medication for blood pressure (BP) control
* International Classification of Diseases (ICD) 9/10 diagnostic code for hypertension
* Evidence of persistent kidney damage, manifested as any of the following present on at least two assessments at least 3 months apart and excluding subjects with acute medical illnesses and changing kidney function:

* Estimated glomerular filtration rate 30-59 mL/min/1.73m2 on two assessments at least 3 months apart with albuminuria or proteinuria less than 2000 mg/g creatinine (or mg/day)
* Estimated glomerular filtration rate greater than or equal to 60 mL/min/1.73m2 with urine albumin excretion 30-2000 mg/g creatinine (or mg/day)
* Estimated glomerular filtration rate greater than or equal to 60 mL/min/1.73m2 with urine protein excretion 150-2000 mg/g creatinine (or mg/day)


All three of the following criteria must be met:

* Baseline estimated glomerular filtration rate greater than 45 mL/min/1.73m2. Baseline defined by the median of the last three outpatient serum creatinine measurements from day 7 to 365 prior to enrollment.

* If only two measurements obtained within this window, the two results will be averaged.
* If only one measurement was obtained within this window, this result will be used
* If baseline is missing the potential participant can be enrolled with an estimated baseline, but only if there is no past medical history of chronic kidney disease.
* Elevated serum creatinine (greater than or equal to 1.5 times baseline as defined above).
* And at least ONE of the following:

* A repeat serum creatinine within 48 hours of initial serum creatinine, showing a further increase of 0.3 mg/dL
* Positive kidney injury urine biomarker, as defined by any of the following:

* NGAL level greater than or equal to 150 ng/mL by ELISA or clinical analyzer
* KIM1 level greater than or equal to 2.8 ng/mL by ELISA
* TIMP2 x IGFBP7 greater than or equal to 2.0 by NephroCheck®
* Urine microscopy suggestive of acute tubular necrosis defined as a urine microscopy score of greater than or equal to 2.

* greater than or equal to 1 Renal Tubular Epithelial cells (RTE) per high powered field (HPF) AND greater than or equal to 1 granular cast/ low powered field (LPF); or
* greater than or equal to 5 Renal Tubular Epithelial cells (RTE) per high powered field (HPF); or
* greater than or equal to 5 granular cast/ low powered field (LPF)

Exclusion Criteria

* Under 18 years of age
* Body Mass Index (BMI) greater than 40 kg/m2
* Allergy to iodinated contrast (any reaction)
* Pregnancy
* Malignancy - Receiving active chemotherapy or radiation to treat malignancy (except for nephrectomy tissue for reference and feasibility studies)
* Transplant recipient (includes solid transplant and bone marrow)
* Additional vulnerable individuals (incarcerated, institutionalized, or otherwise unable to participate in the study)
* Inability to provide informed consent
* Clinical diagnosis of kidney disease from an autoimmune disease, dysproteinemia, viral disease or glomerular disease other than DKD or H-CKD
* Unwilling to receive blood transfusion (if needed)
Minimum Eligible Age

18 Years

Eligible Sex

ALL

Accepts Healthy Volunteers

No

Sponsors

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National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)

NIH

Sponsor Role collaborator

University of Michigan

OTHER

Sponsor Role collaborator

Icahn School of Medicine at Mount Sinai

OTHER

Sponsor Role collaborator

Brigham and Women's Hospital

OTHER

Sponsor Role collaborator

Broad Institute of MIT and Harvard

OTHER

Sponsor Role collaborator

The Cleveland Clinic

OTHER

Sponsor Role collaborator

Columbia University

OTHER

Sponsor Role collaborator

European Molecular Biology Laboratory

UNKNOWN

Sponsor Role collaborator

Indiana University

OTHER

Sponsor Role collaborator

Johns Hopkins University

OTHER

Sponsor Role collaborator

Joslin Diabetes Center

OTHER

Sponsor Role collaborator

Pacific Northwest National Laboratory

FED

Sponsor Role collaborator

Princeton University

OTHER

Sponsor Role collaborator

Stanford University

OTHER

Sponsor Role collaborator

Ohio State University

OTHER

Sponsor Role collaborator

University of California, San Diego

OTHER

Sponsor Role collaborator

University of California, San Francisco

OTHER

Sponsor Role collaborator

University of Pittsburgh

OTHER

Sponsor Role collaborator

The University of Texas Health Science Center at San Antonio

OTHER

Sponsor Role collaborator

University of Texas

OTHER

Sponsor Role collaborator

Washington University School of Medicine

OTHER

Sponsor Role collaborator

Yale University

OTHER

Sponsor Role collaborator

University of Washington

OTHER

Sponsor Role lead

Responsible Party

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Jonathan Himmelfarb

Professor, School of Medicine

Responsibility Role PRINCIPAL_INVESTIGATOR

Principal Investigators

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Jonathan Himmelfarb, MD

Role: PRINCIPAL_INVESTIGATOR

University of Washington

Locations

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Yale University

New Haven, Connecticut, United States

Site Status RECRUITING

Johns Hopkins University

Baltimore, Maryland, United States

Site Status RECRUITING

Brigham & Women's Hospital

Boston, Massachusetts, United States

Site Status RECRUITING

Joslin Diabetes Center

Boston, Massachusetts, United States

Site Status RECRUITING

Columbia University

New York, New York, United States

Site Status RECRUITING

Cleveland Clinic

Cleveland, Ohio, United States

Site Status RECRUITING

University of Pittsburgh

Pittsburgh, Pennsylvania, United States

Site Status RECRUITING

University of Texas at Southwestern

Dallas, Texas, United States

Site Status RECRUITING

Countries

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United States

Central Contacts

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Ashveena Dighe, MS, MPH

Role: CONTACT

206-744-4029

Kristina Blank, MPH

Role: CONTACT

206-897-1957

Facility Contacts

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Tanima Arora, MD

Role: primary

203-640-6196

Ugochukwu Ugwuowo, MD

Role: backup

203-809-2766

Pam Corona, MD

Role: primary

410-502-3852

Rubab Malik

Role: backup

443-287-2771

Zoe Kibbelaar

Role: primary

617-525-8445

Mia Colona

Role: backup

Alison Slack

Role: primary

617-309-4130

Neil Roy, MBBS

Role: backup

617-309-6165

Karla Mehl, MD

Role: primary

212-851-5216

Olivia Balderes

Role: backup

212-851-5216

Leslie Cooperman, RN

Role: primary

216-444-7954

Dianna Sendrey

Role: backup

216-444-4650

Tina Vita

Role: primary

James Winters

Role: backup

Nancy Wang, RN

Role: primary

214-645-8267

Francisco Sanchez

Role: backup

References

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Hsu RK, McCulloch CE, Dudley RA, Lo LJ, Hsu CY. Temporal changes in incidence of dialysis-requiring AKI. J Am Soc Nephrol. 2013 Jan;24(1):37-42. doi: 10.1681/ASN.2012080800. Epub 2012 Dec 6.

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Lameire NH, Bagga A, Cruz D, De Maeseneer J, Endre Z, Kellum JA, Liu KD, Mehta RL, Pannu N, Van Biesen W, Vanholder R. Acute kidney injury: an increasing global concern. Lancet. 2013 Jul 13;382(9887):170-9. doi: 10.1016/S0140-6736(13)60647-9. Epub 2013 May 31.

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USRDS, United States Renal Data Systems 2013 Annual Data Report. United States Renal Data Systems. 2013: [online] http://http://www.usrds.org/2013/pdf/v1_ch6_13.pdf.

Reference Type BACKGROUND

Waikar SS, Liu KD, Chertow GM. Diagnosis, epidemiology and outcomes of acute kidney injury. Clin J Am Soc Nephrol. 2008 May;3(3):844-61. doi: 10.2215/CJN.05191107. Epub 2008 Mar 12.

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Sileanu FE, Murugan R, Lucko N, Clermont G, Kane-Gill SL, Handler SM, Kellum JA. AKI in low-risk versus high-risk patients in intensive care. Clin J Am Soc Nephrol. 2015 Feb 6;10(2):187-96. doi: 10.2215/CJN.03200314. Epub 2014 Nov 25.

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Murugan R, Karajala-Subramanyam V, Lee M, Yende S, Kong L, Carter M, Angus DC, Kellum JA; Genetic and Inflammatory Markers of Sepsis (GenIMS) Investigators. Acute kidney injury in non-severe pneumonia is associated with an increased immune response and lower survival. Kidney Int. 2010 Mar;77(6):527-35. doi: 10.1038/ki.2009.502. Epub 2009 Dec 23.

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Reference Type RESULT

Other Identifiers

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U2CDK114886

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114861

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114866

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114870

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114908

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114915

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114926

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114907

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114920

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114923

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114933

Identifier Type: NIH

Identifier Source: secondary_id

View Link

UH3DK114937

Identifier Type: NIH

Identifier Source: secondary_id

View Link

SITE00000750

Identifier Type: -

Identifier Source: org_study_id

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