Helicobacter Pylori Genome Project (HpGP)

NCT ID: NCT02788214

Last Updated: 2020-12-19

Study Results

Results pending

The study team has not published outcome measurements, participant flow, or safety data for this trial yet. Check back later for updates.

Basic Information

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Recruitment Status

TERMINATED

Total Enrollment

1000 participants

Study Classification

OBSERVATIONAL

Study Start Date

2016-07-27

Study Completion Date

2020-05-15

Brief Summary

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Helicobacter pylori is a common bacterial infection. It can lead to severe stomach problems, including stomach cancer. Researchers want to look at samples of the bacteria. These H. pylori strains will be taken from chronically infected people. They want to identify the genetic and epigenetic differences in H. pylori strains. This could help predict which people who get infected with the bacteria will get stomach cancer. This could lead to the cancer being detected earlier. It could also mean less people get stomach cancer.

Objectives:

To study genetic variations of H. pylori strains based on samples from chronically infected people. To identify the features of strains that might lead to severe stomach problems or stomach cancer.

Eligibility:

People ages 30-70 years who need an upper endoscopy or who were recently diagnosed with stomach cancer

Design:

Participants will be screened by the doctor who does their procedure and a study nurse.

Participants who have endoscopy will have \~6 biopsies removed. These are tissue samples. They are about the size of a grain of rice. Participants will allow the study team to access reports from their stomach exam.

Participants with stomach cancer will donate some of the tissue that will be removed during their clinical care. They will allow the study team to access reports of their surgery. They will also allow them to access the microscope slides of their stomach.

Detailed Description

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Helicobacter pylori, a Gram-negative bacterium associated with a spectrum of benign and malignant gastric conditions, is one of the most genetically variable pathogens. Variations in a few genes have been associated with risk of inflammation and carcinogenesis, but to date no systematic study has evaluated the entire bacterial genome. We propose a multicountry study to establish and analyze an informative international collection of H. pylori clinical isolates from residents of defined geographic areas. Molecular characterization will be conducted at the NCI/DCEG. Our hypothesis is that genetic and epigenetic variations in H. pylori strains among chronically infected individuals may affect risk of progression to gastric cancer. Findings from this study may help to characterize the differential virulence among H. pylori isolates and suggest predictive biomarkers for early diagnosis of cancer. The bacterial isolates and databases from this study will also provide a foundation for further elucidation of H. pylori pathogenesis.

Conditions

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Gastric Cancer Non-Atrophic Gastritis Intestinal Metaplasia

Keywords

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Gastric Cancer Bacterial Risk Factors DNA Methylation DNA Sequencing Biobank Helicobacter pylori SMRT/PacBio

Study Design

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Observational Model Type

CASE_CONTROL

Study Time Perspective

CROSS_SECTIONAL

Study Groups

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Advanced intestinal metaplasia

H. pylori strains from patients with:

* Complete-type intestinal metaplasia with extension to corpus, or
* Incomplete-type intestinal metaplasia of any extent

No interventions assigned to this group

Non-atrophic gastritis

H. pylori strains from patients with non-atrophic gastritis

No interventions assigned to this group

Gastric cancer

H. pylori strains from patients with gastric cancer

No interventions assigned to this group

Eligibility Criteria

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Inclusion Criteria

H. pylori strains collected from:

1. Adult aged 30 to 70 years old.
2. Patients who need upper endoscopy (examination of the lining of their stomach with a flexible tube).
3. Patients with stomach cancer.
Minimum Eligible Age

30 Years

Maximum Eligible Age

70 Years

Eligible Sex

ALL

Accepts Healthy Volunteers

No

Sponsors

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New England Biolabs, USA

UNKNOWN

Sponsor Role collaborator

National Institute of Infectious Diseases, Japan

UNKNOWN

Sponsor Role collaborator

National Institute of Genetics, Japan

UNKNOWN

Sponsor Role collaborator

Chiba University, Japan

UNKNOWN

Sponsor Role collaborator

National Institute for Basic Biology, Japan

UNKNOWN

Sponsor Role collaborator

Instituto Mexicano del Seguro Social

OTHER_GOV

Sponsor Role collaborator

Universidade de Lisboa, Portugal

UNKNOWN

Sponsor Role collaborator

Instituto de Biomedicina de Valencia, Spain

UNKNOWN

Sponsor Role collaborator

University of Bath, UK

UNKNOWN

Sponsor Role collaborator

Vanderbilt University Medical Center, USA

UNKNOWN

Sponsor Role collaborator

Karolinska Institutet

OTHER

Sponsor Role collaborator

University of Tokyo, Japan

UNKNOWN

Sponsor Role collaborator

Max von Pettenkofer-Institute of Hygiene and Medical Microbiology, Germany

UNKNOWN

Sponsor Role collaborator

Universidad de Chile, Chile

UNKNOWN

Sponsor Role collaborator

HOSEI University, Japan

UNKNOWN

Sponsor Role collaborator

National Cancer Institute (NCI)

NIH

Sponsor Role lead

Responsible Party

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Responsibility Role SPONSOR

Principal Investigators

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Charles S. Rabkin, M.D.

Role: PRINCIPAL_INVESTIGATOR

National Cancer Institute (NCI)

M. Constanza Camargo, Ph.D.

Role: PRINCIPAL_INVESTIGATOR

National Cancer Institute (NCI)

Locations

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White River Medical Center

Batesville, Arkansas, United States

Site Status

Stanford University

Stanford, California, United States

Site Status

Georgia Cancer Center Biorepository

Athens, Georgia, United States

Site Status

Centers for Disease Control and Prevention

Atlanta, Georgia, United States

Site Status

Albert Einstein College of Medicine

The Bronx, New York, United States

Site Status

Vanderbilt University Medical Center

Nashville, Tennessee, United States

Site Status

Baylor College of Medicine

Houston, Texas, United States

Site Status

Université Ferhat Abbas

Sétif, , Algeria

Site Status

Hospital Alemán

Buenos Aires, , Argentina

Site Status

Dhaka Medical College and Hospital

Dhaka, , Bangladesh

Site Status

Ghent University

Ghent, , Belgium

Site Status

Universidade Federal de Minas Gerais

Belo Horizonte, , Brazil

Site Status

AC Camargo Cancer Center

São Paulo, , Brazil

Site Status

Medical University of Sofia

Sofia, , Bulgaria

Site Status

Tsaritsa Yoanna University Hospital

Sofia, , Bulgaria

Site Status

Defence Services General Hospital

Yangon, , Burma

Site Status

University of Dschang

Dschang, , Cameroon

Site Status

University of Alberta

Edmonton, , Canada

Site Status

Universidad de Concepción

Concepción, , Chile

Site Status

Hospital Hanga Roa

Easter Island, , Chile

Site Status

Pontificia Universidad Catolica

Santiago, , Chile

Site Status

Instituto Nacional de Cancerología

Bogotá, , Colombia

Site Status

Universidad del Valle

Cali, , Colombia

Site Status

Universidad de Nariño

Pasto, , Colombia

Site Status

Universidad de Costa Rica

San José, , Costa Rica

Site Status

University of Kinshasa

Kinshasa, , Democratic Republic of the Congo

Site Status

University of Mbuji Mayi

Mbuji-Mayi, , Democratic Republic of the Congo

Site Status

Universidad Autónoma de Santo Domingo

Santo Domingo, , Dominican Republic

Site Status

C.H.U. Pellegrin

Bordeaux, , France

Site Status

Otto-von-Guericke Universitätsklinikum

Magdeburg, , Germany

Site Status

University of Cape Coast

Cape Coast, , Ghana

Site Status

Evangelismos Hospital and Hellenic Pasteur Institute

Athens, , Greece

Site Status

Hellenic Pasteur Institute

Athens, , Greece

Site Status

Universidad San Carlos

Guatemala City, , Guatemala

Site Status

Hospital de Occidente

Santa Rosa de Copán, , Honduras

Site Status

National University Hospital

Reykjavik, , Iceland

Site Status

Kasturba Medical College Manipal

Manipal, , India

Site Status

University of Indonesia

Depok, , Indonesia

Site Status

Universitas Airlangga

Surabaya, , Indonesia

Site Status

Digestive Disease Research Institute

Tehran, , Iran

Site Status

Bar Ilan University

Ramat Gan, , Israel

Site Status

Centro di Rferimento Oncologico

Aviano, , Italy

Site Status

Nagoya City University

Nagoya, , Japan

Site Status

Oita University

Ōita, , Japan

Site Status

HOSEI University

Tokyo, , Japan

Site Status

Kyorin University

Tokyo, , Japan

Site Status

Nippon Medical School

Tokyo, , Japan

Site Status

Jordan University of Science and Technology

Ar Ramtha, , Jordan

Site Status

Central Asian Cancer Institute

Almaty, , Kazakhstan

Site Status

Tenwek Hospital

Bomet, , Kenya

Site Status

Kyrgyz State Medical Academy

Bishkek, , Kyrgyzstan

Site Status

University of Latvia

Riga, , Latvia

Site Status

Lithuanian University of Health Sciences

Kaunas, , Lithuania

Site Status

University of Malaya

Kuala Lumpur, , Malaysia

Site Status

Instituto Nacional de Cancerología

Mexico City, , Mexico

Site Status

Chitwan Medical College

Bharatpur, , Nepal

Site Status

Tribhuvan University Teaching Hospital

Kathmandu, , Nepal

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University of Calabar Teaching Hospital

Calabar, , Nigeria

Site Status

University of Nigeria Teaching Hospital

Enugu, , Nigeria

Site Status

Babcock Universtiy Teaching Hospital

Ilishan, , Nigeria

Site Status

University of Jos / University Teaching Hospital

Jos, , Nigeria

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Federal Medical Center

Lagos, , Nigeria

Site Status

Instituto Nacional de Enfermedades Neoplasicas

Lima, , Peru

Site Status

Universidad Peruana Cayetano Heredia

Lima, , Peru

Site Status

University of Lublin

Publin, , Poland

Site Status

Wroclaw Medical Center

Wroclaw, , Poland

Site Status

Instituto Nacional de Saúde Dr. Ricardo Jorge

Lisbon, , Portugal

Site Status

University of Porto

Porto, , Portugal

Site Status

University of Puerto Rico

San Juan, , Puerto Rico

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Clinical Research Center of Moscow

Moscow, , Russia

Site Status

National University Hospital

Singapore, , Singapore

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Chris Hani Baragwanath Academic Hospital

Soweto, , South Africa

Site Status

Seoul National University Bundang Hospital

Seongnam, , South Korea

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Chung-Ang University Hospital

Seoul, , South Korea

Site Status

National Cancer Center

Seoul, , South Korea

Site Status

Hospital Clinic de Barcelona

Barcelona, , Spain

Site Status

Hospital General de Granollers

Barcelona, , Spain

Site Status

Hospital Universitari Parc Tauli

Barcelona, , Spain

Site Status

Institut d'Investigació Biomédica de Bellvitge (Idibell)

Barcelona, , Spain

Site Status

L'Hospitalet de Llobregat

Barcelona, , Spain

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Hospital Donostia

Donostia / San Sebastian, , Spain

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Hospital de Leon

León, , Spain

Site Status

Hospital de la Princesa

Madrid, , Spain

Site Status

Hospital General Universitario Gregorio Marañón

Madrid, , Spain

Site Status

Hospital Universitario de Asturias

Oviedo, , Spain

Site Status

Complejo Hospitalario de Navarra

Pamplona, , Spain

Site Status

Lozano Blesa University Hospital

Zaragoza, , Spain

Site Status

Sudan University of Science and Technology

Khartoum, , Sudan

Site Status

Karolinska Institutet

Stockholm, , Sweden

Site Status

University of Bern

Bern, , Switzerland

Site Status

University of Zurich

Zurich, , Switzerland

Site Status

National Taiwan University Hospital

Taipei, , Taiwan

Site Status

Istanbul University

Istanbul, , Turkey (Türkiye)

Site Status

Cho Ray Hospital

Ho Chi Minh City, , Vietnam

Site Status

Countries

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Egypt Kuwait Venezuela Zambia United States Algeria Argentina Bangladesh Belgium Brazil Bulgaria Burma Cameroon Canada Chile Colombia Costa Rica Democratic Republic of the Congo Dominican Republic France Germany Ghana Greece Guatemala Honduras Iceland India Indonesia Iran Israel Italy Japan Jordan Kazakhstan Kenya Kyrgyzstan Latvia Lithuania Malaysia Mexico Nepal Nigeria Peru Poland Portugal Puerto Rico Russia Singapore South Africa South Korea Spain Sudan Sweden Switzerland Taiwan Turkey (Türkiye) Vietnam

References

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Correa P, Haenszel W, Cuello C, Tannenbaum S, Archer M. A model for gastric cancer epidemiology. Lancet. 1975 Jul 12;2(7924):58-60. doi: 10.1016/s0140-6736(75)90498-5.

Reference Type BACKGROUND
PMID: 49653 (View on PubMed)

Tomb JF, White O, Kerlavage AR, Clayton RA, Sutton GG, Fleischmann RD, Ketchum KA, Klenk HP, Gill S, Dougherty BA, Nelson K, Quackenbush J, Zhou L, Kirkness EF, Peterson S, Loftus B, Richardson D, Dodson R, Khalak HG, Glodek A, McKenney K, Fitzegerald LM, Lee N, Adams MD, Hickey EK, Berg DE, Gocayne JD, Utterback TR, Peterson JD, Kelley JM, Cotton MD, Weidman JM, Fujii C, Bowman C, Watthey L, Wallin E, Hayes WS, Borodovsky M, Karp PD, Smith HO, Fraser CM, Venter JC. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature. 1997 Aug 7;388(6642):539-47. doi: 10.1038/41483.

Reference Type BACKGROUND
PMID: 9252185 (View on PubMed)

Krebes J, Morgan RD, Bunk B, Sproer C, Luong K, Parusel R, Anton BP, Konig C, Josenhans C, Overmann J, Roberts RJ, Korlach J, Suerbaum S. The complex methylome of the human gastric pathogen Helicobacter pylori. Nucleic Acids Res. 2014 Feb;42(4):2415-32. doi: 10.1093/nar/gkt1201. Epub 2013 Dec 2.

Reference Type BACKGROUND
PMID: 24302578 (View on PubMed)

Related Links

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Other Identifiers

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16-C-N120

Identifier Type: -

Identifier Source: secondary_id

999916120

Identifier Type: OTHER

Identifier Source: secondary_id

NCI-2020-07069

Identifier Type: -

Identifier Source: org_study_id